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Results 1 to 23 of 23

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Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutationsKIRYU, Hisanori; ASAI, Kiyoshi.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 8, pp 1093-1101, issn 1367-4803, 9 p.Article

Transformations for the compression of FASTQ quality scores of next-generation sequencing dataWAN, Raymond; VO NGOC ANH; ASAI, Kiyoshi et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 5, pp 628-635, issn 1367-4803, 8 p.Article

SCARNA : fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragmentsTABEI, Yasuo; TSUDA, Koji; KIN, Taishin et al.Bioinformatics (Oxford. Print). 2006, Vol 22, Num 14, pp 1723-1729, issn 1367-4803, 7 p.Article

Murlet : a practical multiple alignment tool for structural RNA sequencesKIRYU, Hisanori; TABEI, Yasuo; KIN, Taishin et al.Bioinformatics (Oxford. Print). 2007, Vol 23, Num 13, pp 1588-1598, issn 1367-4803, 11 p.Article

Robust prediction of consensus secondary structures using averaged base pairing probability matricesKIRVU, Hisanori; KIN, Taishin; ASAI, Kiyoshi et al.Bioinformatics (Oxford. Print). 2007, Vol 23, Num 4, pp 434-441, issn 1367-4803, 8 p.Article

Selective integration of multiple biological data for supervised network inferenceKATO, Tsuyoshi; TSUDA, Koji; ASAI, Kiyoshi et al.Bioinformatics (Oxford. Print). 2005, Vol 21, Num 10, pp 2488-2495, issn 1367-4803, 8 p.Article

Extracting relations between promoter sequences and their strengths from microarray dataKIRYU, Hisanori; OSHIMA, Taku; ASAI, Kiyoshi et al.Bioinformatics (Oxford. Print). 2005, Vol 21, Num 7, pp 1062-1068, issn 1367-4803, 7 p.Article

Conic Programming for Multitask LearningKATO, Tsuyoshi; KASHIMA, Hisahi; SUGIYAMA, Masashi et al.IEEE transactions on knowledge and data engineering. 2010, Vol 22, Num 7, pp 957-958, issn 1041-4347, 2 p.Article

Rfold : an exact algorithm for computing local base pairing probabilitiesKIRYU, Hisanori; KIN, Taishin; ASAI, Kiyoshi et al.Bioinformatics (Oxford. Print). 2008, Vol 24, Num 3, pp 367-373, issn 1367-4803, 7 p.Article

Accurate extraction of functional associations between proteins based on common interaction partners and common domainsOKADA, Kinya; KANAYA, Shigehiko; ASAI, Kiyoshi et al.Bioinformatics (Oxford. Print). 2005, Vol 21, Num 9, pp 2043-2048, issn 1367-4803, 6 p.Article

CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs scoreHAMADA, Michiaki; SATO, Kengo; KIRYU, Hisanori et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 24, pp 3236-3243, issn 1367-4803, 8 p.Article

Mining frequent stem patterns from unaligned RNA sequencesHAMADA, Michiaki; TSUDA, Koji; KUDO, Taku et al.Bioinformatics (Oxford. Print). 2006, Vol 22, Num 20, pp 2480-2487, issn 1367-4803, 8 p.Article

Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detectionHAMADA, Michiaki; WIJAYA, Edward; FRITH, Martin C et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 22, pp 3085-3092, issn 1367-4803, 8 p.Article

DAFS: simultaneous aligning and folding of RNA sequences via dual decompositionSATO, Kengo; KATO, Yuki; AKUTSU, Tatsuya et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 24, pp 3218-3224, issn 1367-4803, 7 p.Article

Prediction of RNA secondary structure using generalized centroid estimatorsHAMADA, Michiaki; KIRYU, Hisanori; SATO, Kengo et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 4, pp 465-473, issn 1367-4803, 9 p.Article

A detailed investigation of accessibilities around target sites of siRNAs and miRNAsKIRYU, Hisanori; TERAI, Goro; IMAMURA, Osamu et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 13, pp 1788-1797, issn 1367-4803, 10 p.Article

A regulatory circuit for piwi by the large Maf gene traffic jam in DrosophilaSAITO, Kuniaki; INAGAKI, Sachi; MITUYAMA, Toutai et al.Nature (London). 2009, Vol 461, Num 7268, pp 1296-1299, issn 0028-0836, 4 p.Article

Genomics of Aspergillus oryzaeKOBAYASHI, Tetsuo; ABE, Keietsu; ASAI, Kiyoshi et al.Bioscience, biotechnology, and biochemistry. 2007, Vol 71, Num 3, pp 646-670, issn 0916-8451, 25 p.Article

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzaeGALAGAN, James E; CALVO, Sarah E; KAPITONOV, Vladimir et al.Nature (London). 2005, Vol 438, Num 7071, pp 1105-1115, issn 0028-0836, 11 p.Article

The voltage-sensitive sodium channel is a bell-shaped molecule with several cavitiesSATO, Chikara; UENO, Yutaka; ASAI, Kiyoshi et al.Nature (London). 2001, Vol 409, Num 6823, pp 1047-1051, issn 0028-0836Article

Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cellsKAWAMURA, Yoshinori; SAITO, Kuniaki; KIN, Taishin et al.Nature (London). 2008, Vol 453, Num 7196, pp 793-797, issn 0028-0836, 5 p.Article

Genome sequencing and analysis of Aspergillus oryzaeMACHIDA, Masayuki; ASAI, Kiyoshi; ABE, Keietsu et al.Nature (London). 2005, Vol 438, Num 7071, pp 1157-1161, issn 0028-0836, 5 p.Article

A new variational framework for rigid-body alignmentKATO, Tsuyoshi; TSUDA, Koji; TOMII, Kentaro et al.Lecture notes in computer science. 2004, pp 171-179, issn 0302-9743, isbn 3-540-22570-6, 9 p.Conference Paper

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