Nitrite production by Nitrosomonas europaea and Nitrosospira sp. AV in soils at different solution concentrations of ammoniumTAYLOR, Anne E; BOTTOMLEY, Peter J.Soil biology & biochemistry. 2006, Vol 38, Num 4, pp 828-836, issn 0038-0717, 9 p.Article

Distribution and fate of ¹³C-labeled root and straw residues from ryegrass and crimson clover in soil under western Oregon field conditionsWILLIAMS, Mark A; MYROLD, David D; BOTTOMLEY, Peter J et al.Biology and fertility of soils. 2006, Vol 42, Num 6, pp 523-531, issn 0178-2762, 9 p.Article

D-Lactate metabolism and the obligate requirement for CO₂ during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensisSTARKENBURG, Shawn R; ARP, Daniel J; BOTTOMLEY, Peter J et al.Microbiology (Reading). 2008, Vol 154, pp 2473-2481, issn 1350-0872, 9 p., 8Article

Carbon flow from ¹³C-labeled straw and root residues into the phospholipid fatty acids of a soil microbial community under field conditionsWILLIAMS, Mark A; MYROLD, David D; BOTTOMLEY, Peter J et al.Soil biology & biochemistry. 2006, Vol 38, Num 4, pp 759-768, issn 0038-0717, 10 p.Article

A soil quality index based on the equilibrium between soil organic matter and biochemical properties of undisturbed coniferous forest soils of the Pacific NorthwestCHAER, Guilherme M; MYROLD, David D; BOTTOMLEY, Peter J et al.Soil biology & biochemistry. 2009, Vol 41, Num 4, pp 822-830, issn 0038-0717, 9 p.Article

Carbon flow from ¹³C-labeled clover and ryegrass residues into a residue-associated microbial community under field conditionsWILLIAMS, Mark A; MYROLD, David D; BOTTOMLEY, Peter J et al.Soil biology & biochemistry. 2007, Vol 39, Num 3, pp 819-822, issn 0038-0717, 4 p.Article

Cytotoxicity associated with trichloroethylene oxidation in Burkholderia cepacia G4YEAGER, Chris M; BOTTOMLEY, Peter J; ARP, Daniel J et al.Applied and environmental microbiology (Print). 2001, Vol 67, Num 5, pp 2107-2115, issn 0099-2240Article

Soil Microbial Communities Associated with Douglas-fir and Red Alder Stands at High- and Low-Productivity Forest Sites in Oregon, USAYARWOOD, Stephanie A; BOTTOMLEY, Peter J; MYROLD, David D et al.Microbial ecology. 2010, Vol 60, Num 3, pp 606-617, issn 0095-3628, 12 p.Article

Requirement of DNA repair mechanisms for survival of Burkholderia cepacia G4 upon degradation of trichloroethyleneYEAGER, Chris M; BOTTOMLEY, Peter J; ARP, Daniel J et al.Applied and environmental microbiology (Print). 2001, Vol 67, Num 12, pp 5384-5391, issn 0099-2240Article

Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaeaVAJRALA, Neeraja; MARTENS-HABBENA, Willm; SAYAVEDRA-SOTO, Luis A et al.Proceedings of the National Academy of Sciences of the United States of America. 2013, Vol 110, Num 3, pp 1006-1011, issn 0027-8424, 6 p.Article

Product and product-independent induction of butane oxidation in Pseudomonas butanovoraSAYAVEDRA-SOTO, Luis A; DOUGHTY, David M; KURTH, Elizabeth G et al.FEMS microbiology letters. 2005, Vol 250, Num 1, pp 111-116, issn 0378-1097, 6 p.Article

Dynamics of microbial communities during decomposition of carbon-13 labeled ryegrass fractions in soilMCMAHON, Shawna K; WILLIAMS, Mark A; BOTTOMLEY, Peter J et al.Soil Science Society of America journal. 2005, Vol 69, Num 4, pp 1238-1247, issn 0361-5995, 10 p.Article

Atrazine remediation in wetland microcosmsRUNES, Heather B; BOTTOMLEY, Peter J; LERCH, Robert N et al.Environmental toxicology and chemistry. 2001, Vol 20, Num 5, pp 1059-1066, issn 0730-7268Article

Shifts in Microbial Community Composition and Physiological Profiles across a Gradient of Induced Soil DegradationCHAER, Guilherme M; FERNANDES, Marcelo F; MYROLD, David D et al.Soil Science Society of America journal. 2009, Vol 73, Num 4, pp 1327-1334, issn 0361-5995, 8 p.Article

Global transcriptional response of Nitrosomonas europaea to chloroform and chloromethaneGVAKHARIA, Barbara O; PERMINA, Elizabeth A; GELFAND, Mikhail S et al.Applied and environmental microbiology (Print). 2007, Vol 73, Num 10, pp 3440-3445, issn 0099-2240, 6 p.Article

Evidence for Different Contributions of Archaea and Bacteria to the Ammonia-Oxidizing Potential of Diverse Oregon SoilsTAYLOR, Anne E; ZEGLIN, Lydia H; DOOLEY, Sandra et al.Applied and environmental microbiology (Print). 2010, Vol 76, Num 23, pp 7691-7698, issn 0099-2240, 8 p.Article

Thauera butanivorans sp. nov., a C₂―C₉ alkane-oxidizing bacterium previously referred to as 'Pseudomonas butanovora'DUBBELS, Bradley L; SAYAVEDRA-SOTO, Luis A; BOTTOMLEY, Peter J et al.International journal of systematic and evolutionary microbiology (Print). 2009, Vol 59, pp 1576-1578, issn 1466-5026, 3 p., 7Article

Kinetic characterization of the soluble butane monooxygenase from Thauera butanivorans, formerly 'Pseudomonas butanovora'COOLEY, Richard B; DUBBELS, Bradley L; SAYAVEDRA-SOTO, Luis A et al.Microbiology (Reading). 2009, Vol 155, pp 2086-2096, issn 1350-0872, 11 p., 6Article

Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil EnvironmentNORTON, Jeanette M; KLOTZ, Martin G; STARKENBURG, Shawn R et al.Applied and environmental microbiology (Print). 2008, Vol 74, Num 11, pp 3559-3572, issn 0099-2240, 14 p.Article

Distribution and turnover of recently fixed photosynthate in ryegrass rhizospheresBUTLER, Jessica L; BOTTOMLEY, Peter J; GRIFFITH, Stephen M et al.Soil biology & biochemistry. 2004, Vol 36, Num 2, pp 371-382, issn 0038-0717, 12 p.Article

Trichloroethylene degradation by toluene-oxidizing bacteria grown on non-aromatic substratesYEAGER, Chris M; ARTHUR, Kirstin M; BOTTOMLEY, Peter J et al.Biodegradation (Dordrecht). 2004, Vol 15, Num 1, pp 19-28, issn 0923-9820, 10 p.Article

Use of Aliphatic n-Alkynes To Discriminate Soil Nitrification Activities of Ammonia-Oxidizing Thaumarchaea and BacteriaTAYLOR, Anne E; VAJRALA, Neeraja; GIGUERE, Andrew T et al.Applied and environmental microbiology (Print). 2013, Vol 79, Num 21, pp 6544-6551, issn 0099-2240, 8 p.Article

Nitrogen mineralization and assimilation at millimeter scalesCLIFF, John B; BOTTOMLEY, Peter J; GASPAR, Daniel J et al.Soil biology & biochemistry. 2007, Vol 39, Num 3, pp 823-826, issn 0038-0717, 4 p.Article

Utilization of fluoroethene as a surrogate for aerobic vinyl chloride transformationTAYLOR, Anne E; DOLAN, Mark E; BOTTOMLEY, Peter J et al.Environmental science & technology. 2007, Vol 41, Num 18, pp 6378-6383, issn 0013-936X, 6 p.Article

Site-directed amino acid substitutions in the hydroxylase a subunit of butane monooxygenase from Pseudomonas butanovora : Implications for substrates knocking at the gateHALSEY, Kimberly H; SAYAVEDRA-SOTO, Luis A; BOTTOMLEY, Peter J et al.Journal of bacteriology. 2006, Vol 188, Num 13, pp 4962-4969, issn 0021-9193, 8 p.Article