Connecting the dots: role of standardization and technology sharing in biological simulationGHOSH, Samik; MATSUOKA, Yukiko; KITANO, Hiroaki et al.Drug discovery today. 2010, Vol 15, Num 23-24, pp 1024-1031, issn 1359-6446, 8 p.Article

Using process diagrams for the graphical representation of biological networksKITANO, Hiroaki; FUNAHASHI, Akira; MATSUOKA, Yukiko et al.Nature biotechnology. 2005, Vol 23, Num 8, pp 961-966, issn 1087-0156, 6 p.Article

Payao: a community platform for SBML pathway model curationMATSUOKA, Yukiko; GHOSH, Samik; KIKUCHI, Norihiro et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 10, pp 1381-1383, issn 1367-4803, 3 p.Article

Occurrence of perchlorate in drinking water sources of metropolitan area in JapanKOSAKA, Koji; ASAMI, Mari; MATSUOKA, Yukiko et al.Water research (Oxford). 2007, Vol 41, Num 15, pp 3474-3482, issn 0043-1354, 9 p.Article

Software for systems biology: from tools to integrated platformsCHOSH, Samik; MATSUOKA, Yukiko; ASAI, Yoshiyuki et al.Nature reviews. Genetics (Print). 2011, Vol 12, Num 12, pp 821-832, issn 1471-0056, 12 p.Article

BioPAX support in CellDesignerHUAIYU MI; MURUGANUJAN, Anushya; DEMIR, Emek et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 24, pp 3437-3438, issn 1367-4803, 2 p.Article

Software support for SBGN maps: SBGN-ML and LibSBGNLERSEL, Martijn P. Van; VILLEGER, Alice C; FUNAHASHI, Akira et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 15, pp 2016-2021, issn 1367-4803, 6 p.Article

CellDesigner 3.5 : A Versatile Modeling Tool for Biochemical NetworksFUNAHASHI, Akira; MATSUOKA, Yukiko; JOURAKU, Akiya et al.Proceedings of the IEEE. 2008, Vol 96, Num 8, pp 1254-1265, issn 0018-9219, 12 p.Article

Toward an integrated software platform for systems pharmacologyGHOSH, Samik; MATSUOKA, Yukiko; ASAI, Yoshiyuki et al.Biopharmaceutics & drug disposition. 2013, Vol 34, Num 9, pp 508-526, issn 0142-2782, 19 p.Article

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databasesLOPES, Tiago J. S; SCHAEFER, Martin; SHOEMAKER, Jason et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 17, pp 2414-2421, issn 1367-4803, 8 p.Article

Integration of CellDesigner and SABIO-RKFUNAHASHI, Akira; JOURAKU, Akiya; MATSUOKA, Yukiko et al.In silico biology (Gedrukt). 2007, Vol 7, Num 2, issn 1386-6338, S81-S90, SUPConference Paper

Metabolic syndrome and robustness tradeoffsKITANO, Hiroaki; ODA, Kanae; KIMURA, Tomomi et al.Diabetes (New York, NY). 2004, Vol 53, pp S6-S15, issn 0012-1797, SUP3Conference Paper

The Systems Biology Graphical NotationLE NOVERE, Nicolas; HUCKA, Michael; BERGMAN, Frank T et al.Nature biotechnology (Print). 2009, Vol 27, Num 8, pp 735-741, issn 1087-0156, 7 p.Article