Microarray data normalization and transformationQUACKENBUSH, John.Nature genetics. 2002, Vol 32, Num DEC, pp 496-501, issn 1061-4036, 6 p., SUPArticle

Microarray analysis and tumor classificationQUACKENBUSH, John.The New England journal of medicine. 2006, Vol 354, Num 23, pp 2463-2472, issn 0028-4793, 10 p.Article

New Genomic Technologies and ApplicationsFAN, Jian-Bing; QUACKENBUSH, John.Genomics (San Diego, Calif.). 2011, Vol 98, Num 4, issn 0888-7543, 88 p.Serial Issue

Confounding Effects in A Six-Gene Signature Predicting Breast Cancer Lung MetastasisCULHANE, Aedín C; QUACKENBUSH, John.Cancer research (Chicago, Ill.). 2009, Vol 69, Num 18, pp 7480-7485, issn 0008-5472, 6 p.Article

Characterization of a Vibrio vulnificus LysR homologue, Hupr, which regulates expression of the haem uptake outer membrane protein, HupALITWIN, Christine M; QUACKENBUSH, John.Microbial pathogenesis. 2001, Vol 31, Num 6, pp 295-307, issn 0882-4010Article

The quest for the mechanisms of lifeKLAPA, Maria I; QUACKENBUSH, John.Biotechnology and bioengineering. 2003, Vol 84, Num 7, pp 739-742, issn 0006-3592, 4 p.Article

Defining an informativeness metric for clustering gene expression dataMAR, Jessica C; WELLS, Christine A; QUACKENBUSH, John et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 8, pp 1094-1100, issn 1367-4803, 7 p.Article

Open source software for the analysis of microarray dataDUDOIT, Sandrine; GENTLEMAN, Robert C; QUACKENBUSH, John et al.BioTechniques. 2003, Num MAR, pp 45-51, issn 0736-6205, 7 p., SUPArticle

Dynamical and integrative cell signaling: Challenges for the new biologyLEVCHENKO, Andre.Biotechnology and bioengineering. 2003, Vol 84, Num 7, pp 773-782, issn 0006-3592, 10 p.Article

Genesis: cluster analysis of microarray dataSTURN, Alexander; QUACKENBUSH, John; TRAJANOSKI, Zlatko et al.Bioinformatics (Oxford. Print). 2002, Vol 18, Num 1, pp 207-208, issn 1367-4803Article

MeSHher : identifying biological concepts in microarray assays based on PubMed references and MeSH termsDJEBBARI, Amira; KARAMYCHEVA, Svetlana; HOWE, Eleanor et al.Bioinformatics (Oxford. Print). 2005, Vol 21, Num 15, pp 3324-3326, issn 1367-4803, 3 p.Article

Systems approaches to biotechnology: systems biotechnology in the makingHATZIMANIKATIS, Vassily; OUZOUNIS, Christos; QUACKENBUSH, John et al.Biotechnology and bioengineering. 2003, Vol 84, Num 7, issn 0006-3592, 165 p.Serial Issue

What would you do if you could sequence everything? : Next-generation sequencingKAHVEJIAN, Avak; QUACKENBUSH, John; THOMPSON, John F et al.Nature biotechnology (Print). 2008, Vol 26, Num 10, pp 1125-1133, issn 1087-0156, 9 p.Article

Time-Series Integrated Omic Analyses to Elucidate Short-Term Stress-Induced Responses in Plant Liquid CulturesDUTTA, Bhaskar; KANANI, Harin; QUACKENBUSH, John et al.Biotechnology and bioengineering. 2009, Vol 102, Num 1, pp 264-279, issn 0006-3592, 16 p.Article

RNA-Seq analysis in MeVHOWE, Eleanor A; SINHA, Raktim; SCHLAUCH, Daniel et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 22, pp 3209-3210, issn 1367-4803, 2 p.Article

A new disease-specific machine learning approach for the prediction of cancer-causing missense variantsCAPRIOTTI, Emidio; ALTMAN, Russ B.Genomics (San Diego, Calif.). 2011, Vol 98, Num 4, pp 310-317, issn 0888-7543, 8 p.Article

Exploiting evolutionary relationships for predicting protein structuresTRAMONTANO, Anna; MOREA, Veronica.Biotechnology and bioengineering. 2003, Vol 84, Num 7, pp 756-762, issn 0006-3592, 7 p.Article

A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancersJIRAWATNOTAI, Siwanon; YIDUO HU; KUNKEL, Thomas A et al.Nature (London). 2011, Vol 474, Num 7350, pp 230-234, issn 0028-0836, 5 p.Article

A novel method for determining microflora composition using dynamic phylogenetic analysis of 16S ribosomal RNA deep sequencing dataCHAN, Ernest R; HESTER, James; KALADY, Matthew et al.Genomics (San Diego, Calif.). 2011, Vol 98, Num 4, pp 253-259, issn 0888-7543, 7 p.Article

Functional classification analysis of somatically mutated genes in human breast and colorectal cancersCHITTENDEN, Thomas W; HOWE, Eleanor A; CULHANE, Aedin C et al.Genomics (San Diego, Calif.). 2008, Vol 91, Num 6, pp 508-511, issn 0888-7543, 4 p.Article

Physiogenomic resources for rat models of heart, lung and blood disordersMALEK, Renae L; WANG, Hong-Ying; HASINOFF, Michael et al.Nature genetics. 2006, Vol 38, Num 2, pp 234-239, issn 1061-4036, 6 p.Article

Molecular staging for survival prediction of colorectal cancer patientsESCHRICH, Steven; YANG, Ivana; QUACKENBUSH, John et al.Journal of clinical oncology. 2005, Vol 23, Num 15, pp 3526-3535, issn 0732-183X, 10 p.Article

Osteopontin identified as colon cancer tumor progression markerAGRAWAL, Deepak; CHEN, Tingan; IRBY, Rosalyn et al.Comptes rendus. Biologies. 2003, Vol 326, Num 10-11, pp 1041-1043, issn 1631-0691, 3 p.Article

Escherichia coli: A model system that benefits from and contributes to the evolution of proteomicsLEE, Pat S; LEE, Kelvin H.Biotechnology and bioengineering. 2003, Vol 84, Num 7, pp 801-814, issn 0006-3592, 14 p.Article

A perspective of Metabolic engineering strategies: Moving up the systems hierarchyBULTER, Thomas; BERNSTEIN, Jeffrey R; LIAO, James C et al.Biotechnology and bioengineering. 2003, Vol 84, Num 7, pp 815-821, issn 0006-3592, 7 p.Article