What are decision trees?KINGSFORD, Carl; SALZBERG, Steven L.Nature biotechnology (Print). 2008, Vol 26, Num 9, pp 1011-1013, issn 1087-0156, 3 p.Article

FLASH: fast length adjustment of short reads to improve genome assembliesMAGOC, Tanja; SALZBERG, Steven L.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 21, pp 2957-2963, issn 1367-4803, 7 p.Article

Bioinformatics challenges of new sequencing technologyPOP, Mihai; SALZBERG, Steven L.Trends in genetics (Regular ed.). 2008, Vol 24, Num 3, pp 142-149, issn 0168-9525, 8 p.Article

Repetitive DNA and next-generation sequencing: computational challenges and solutionsTREANGEN, Todd J; SALZBERG, Steven L.Nature reviews. Genetics (Print). 2012, Vol 13, Num 1, pp 38-48, issn 1471-0056, 11 p.Article

Mugsy: fast multiple alignment of closely related whole genomesANGIUOLI, Samuel V; SALZBERG, Steven L.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 3, pp 334-342, issn 1367-4803, 9 p.Article

JIGSAW : integration of multiple sources of evidence for gene predictionALLEN, Jonathan E; SALZBERG, Steven L.Bioinformatics (Oxford. Print). 2005, Vol 21, Num 18, pp 3596-3603, issn 1367-4803, 8 p.Article

TopHat : discovering splice junctions with RNA-SeqTRAPNELL, Cole; PACHTER, Lior; SALZBERG, Steven L et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 9, pp 1105-1111, issn 1367-4803, 7 p.Article

Microbial genes in the human genome: Lateral transfer or gene loss?SALZBERG, Steven L; WHITE, Owen; PETERSON, Jeremy et al.Science (Washington, D.C.). 2001, Vol 292, Num 5523, pp 1903-1906, issn 0036-8075Article

Comparative genome assemblyPOP, Mihai; PHILLIPPY, Adam; DELCHER, Arthur L et al.Briefings in bioinformatics. 2004, Vol 5, Num 3, pp 237-248, issn 1467-5463, 12 p.Article

Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytesGARDNER, Malcolm J; BISHOP, Richard; WILSON, Robert J. M et al.Science (Washington, D.C.). 2005, Vol 309, Num 5731, pp 134-137, issn 0036-8075, 4 p.Article

A probabilistic method for identifying start codons in bacterial genomesSUZEK, Baris E; ERMOLAEVA, Maria D; SCHREIBER, Mark et al.Bioinformatics (Oxford. Print). 2001, Vol 17, Num 12, pp 1123-1130, issn 1367-4803, 8 p.Article

Identifying bacterial genes and endosymbiont DNA with glimmerDELCHER, Arthur L; BRATKE, Kirsten A; POWERS, Edwin C et al.Bioinformatics (Oxford. Print). 2007, Vol 23, Num 6, pp 673-679, issn 1367-4803, 7 p.Article

Rice bioinformatics. Analysis of Rice sequence data and leveraging the data to other plant speciesQIAOPING YUAN; QUACKENBUSH, John; SULTANA, Razvan et al.Plant physiology (Bethesda). 2001, Vol 125, Num 3, pp 1166-1174, issn 0032-0889Article

Genome Sequence of the Wolbachia Endosymbiont of Culex quinquefasciatus JHBSALZBERG, Steven L; PUIU, Daniela; SOMMER, Daniel D et al.Journal of bacteriology. 2009, Vol 191, Num 5, pp 1725-1725, issn 0021-9193, 1 p.Article

DAGchainer: a tool for mining segmental genome duplications and syntenyHAAS, Brian J; DELCHER, Arthur L; WORTMAN, Jennifer R et al.Bioinformatics (Oxford. Print). 2004, Vol 20, Num 18, pp 3643-3646, issn 1367-4803, 4 p.Article

Physiogenomic resources for rat models of heart, lung and blood disordersMALEK, Renae L; WANG, Hong-Ying; HASINOFF, Michael et al.Nature genetics. 2006, Vol 38, Num 2, pp 234-239, issn 1061-4036, 6 p.Article

The genome sequence of the malaria mosquito Anopheles gambiae : The Mosquito genome: Anopheles GambiaHOLT, Robert A; MANI SUBRAMANIAN, G; SALZBERG, Steven L et al.Science (Washington, D.C.). 2002, Vol 298, Num 5591, pp 129-149, issn 0036-8075, 21 p.Article

Draft genome of the filarial nematode parasite brugia malayiGHEDIN, Elodie; SHILIANG WANG; ANGIUOLI, Samuel V et al.Science (Washington, D.C.). 2007, Vol 317, Num 5845, pp 1756-1760, issn 0036-8075, 5 p.Article

The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformansLOFTUS, Brendan J; FUNG, Eula; ALLEN, Jonathan E et al.Science (Washington, D.C.). 2005, Vol 307, Num 5713, pp 1321-1324, issn 0036-8075, 4 p.Article

Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1MILLER, Todd R; DELCHER, Arthur L; SALZBERG, Steven L et al.Journal of bacteriology. 2010, Vol 192, Num 22, pp 6101-6102, issn 0021-9193, 2 p.Article

Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolutionGHEDIN, Elodie; SENGAMALAY, Naomi A; DERNOVOY, Dmitry et al.Nature (London). 2005, Vol 437, Num 7062, pp 1162-1166, issn 0028-0836, 5 p.Article

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genomeMURAL, Richard J; ADAMS, Mark D; SALZBERG, Steven L et al.Science (Washington, D.C.). 2002, Vol 296, Num 5573, pp 1661-1671, issn 0036-8075Article

Complete genome sequence of a virulent isolate of Streptococcus pneumoniaeTETTELIN, Hervé; NELSON, Karen E; DURKIN, A. Scott et al.Science (Washington, D.C.). 2001, Vol 293, Num 5529, pp 498-506, issn 0036-8075Article

Comparative genomics of the neglected human malaria parasite Plasmodium vivaxCARLTON, Jane M; ADAMS, John H; QIN CHENG et al.Nature (London). 2008, Vol 455, Num 7214, pp 757-763, issn 0028-0836, 7 p.Article

The genome sequence of Bacillus anthracis and comparison to closely related bacteriaREAD, Timothy D; PETERSON, Scott N; HOLTZAPPLE, Erik K et al.Nature (London). 2003, Vol 423, Num 6935, pp 81-86, issn 0028-0836, 6 p.Article