Application of metatranscriptomics to soil environmentsCARVALHAIS, Lilia C; DENNIS, Paul G; TYSON, Gene W et al.Journal of microbiological methods. 2012, Vol 91, Num 2, pp 246-251, issn 0167-7012, 6 p.Article

High-Throughput Amplicon Sequencing Reveals Distinct Communities within a Corroding Concrete Sewer SystemCAYFORD, Barry I; DENNIS, Paul G; KELLER, Jurg et al.Applied and environmental microbiology (Print). 2012, Vol 78, Num 19, pp 7160-7162, issn 0099-2240, 3 p.Article

Strategy for Modular Tagged High-Throughput Amplicon SequencingDE CARCER, Daniel Aguirre; DENMAN, Stuart E; MCSWEENEY, Chris et al.Applied and environmental microbiology (Print). 2011, Vol 77, Num 17, pp 6310-6312, issn 0099-2240, 3 p.Article

Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological SamplesCHEVAL, Justine; SAUVAGE, Virginie; BRISSE, Sylvain et al.Journal of clinical microbiology (Print). 2011, Vol 49, Num 9, pp 3268-3275, issn 0095-1137, 8 p.Article

Evaluation of a Transposase Protocol for Rapid Generation of Shotgun High-Throughput Sequencing Libraries from Nanogram Quantities of DNAMARINE, Rachel; POLSON, Shawn W; RAVEL, Jacques et al.Applied and environmental microbiology (Print). 2011, Vol 77, Num 22, pp 8071-8079, issn 0099-2240, 9 p.Article

OSA: a fast and accurate alignment tool for RNA-SeqJUN HU; HUANYING GE; NEWMAN, Matt et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 14, pp 1933-1934, issn 1367-4803, 2 p.Article

Small RNA library preparation for next-generation sequencing by single ligation, extension and circularization technologyKWON, Young-Soo.Biotechnology letters. 2011, Vol 33, Num 8, pp 1633-1641, issn 0141-5492, 9 p.Article

Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approachesLOGARES, Ramiro; HAVERKAMP, Thomas H. A; KUMAR, Surendra et al.Journal of microbiological methods. 2012, Vol 91, Num 1, pp 106-113, issn 0167-7012, 8 p.Article

Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technologySCHWIENTEK, Patrick; SZCZEPANOWSKI, Rafael; RÜCKERT, Christian et al.Journal of biotechnology. 2011, Vol 155, Num 1, pp 68-77, issn 0168-1656, 10 p.Conference Paper

High-Throughput Sequencing for Detection of Subpopulations of Bacteria Not Previously Associated with Artisanal CheesesQUIGLEY, Lisa; O'SULLIVAN, Orla; BERESFORD, Tom P et al.Applied and environmental microbiology (Print). 2012, Vol 78, Num 16, pp 5717-5723, issn 0099-2240, 7 p.Article

DEGseq: an R package for identifying differentially expressed genes from RNA-seq dataLIKUN WANG; ZHIXING FENG; XI WANG et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 1, pp 136-138, issn 1367-4803, 3 p.Article

Fulcrum: condensing redundant reads from high-throughput sequencing studiesBURRIESCI, Matthew S; LEHNERT, Erik M; PRINGLE, John R et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 10, pp 1324-1327, issn 1367-4803, 4 p.Article

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)GRANT, Gregory R; FARKAS, Michael H; PIZARRO, Angel D et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 18, pp 2518-2528, issn 1367-4803, 11 p.Article

RNA-Seq analysis in MeVHOWE, Eleanor A; SINHA, Raktim; SCHLAUCH, Daniel et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 22, pp 3209-3210, issn 1367-4803, 2 p.Article

Evaluation of Subsampling-Based Normalization Strategies for Tagged High-Throughput Sequencing Data Sets from Gut MicrobiomesAGUIRRE DE CARCER, Daniel; DENMAN, Stuart E; MCSWEENEY, Chris et al.Applied and environmental microbiology (Print). 2011, Vol 77, Num 24, pp 8795-8798, issn 0099-2240, 4 p.Article

Accurate and sensitive diagnosis of geminiviruses through enrichment, high-throughput sequencing and automated sequence identificationHAGEN, Charles; FRIZZI, Alessandra; GABRIELS, Suzan et al.Archives of virology. 2012, Vol 157, Num 5, pp 907-915, issn 0304-8608, 9 p.Article

FX: an RNA-Seq analysis tool on the cloudDONGWAN HONG; RHIE, Arang; CHONG, Hyonyong et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 5, pp 721-723, issn 1367-4803, 3 p.Article

High-throughput sequencing and clinical microbiology: progress, opportunities and challengesPALLEN, Mark J; LOMAN, Nicholas J; PENN, Charles W et al.Current opinion in microbiology. 2010, Vol 13, Num 5, pp 625-631, issn 1369-5274, 7 p.Article

Supersplat-spliced RNA-seq alignmentBRYANT, Douglas W; SHEN, Rongkun; PRIEST, Henry D et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 12, pp 1500-1505, issn 1367-4803, 6 p.Article

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patternsLANGENBERGER, David; PUNDHIR, Sachin; EKSTRØM, Claus T et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 1, pp 17-24, issn 1367-4803, 8 p.Article

A probabilistic framework for aligning paired-end RNA-seq dataYIN HU; KAI WANG; XIAPING HE et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 16, pp 1950-1957, issn 1367-4803, 8 p.Article

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScriptBENELLI, Matteo; PESCUCCI, Chiara; MARSEGLIA, Giuseppina et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 24, pp 3232-3239, issn 1367-4803, 8 p.Article

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summariesHABEGGER, Lukas; SBONER, Andrea; GIANOULIS, Tara A et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 2, pp 281-283, issn 1367-4803, 3 p.Article

Metagenomic analysis: the challenge of the data bonanzaHUNTER, Chris I; MITCHELL, Alex; JONES, Philip et al.Briefings in bioinformatics. 2012, Vol 13, Num 6, pp 743-746, issn 1467-5463, 4 p.Article

Next generation sequencing of microbial transcriptomes: challenges and opportunitiesVAN VLIET, Arnoud H. M.FEMS microbiology letters. 2010, Vol 302, Num 1, pp 1-7, issn 0378-1097, 7 p.Article