Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological SamplesCHEVAL, Justine; SAUVAGE, Virginie; BRISSE, Sylvain et al.Journal of clinical microbiology (Print). 2011, Vol 49, Num 9, pp 3268-3275, issn 0095-1137, 8 p.Article

OSA: a fast and accurate alignment tool for RNA-SeqJUN HU; HUANYING GE; NEWMAN, Matt et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 14, pp 1933-1934, issn 1367-4803, 2 p.Article

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patternsLANGENBERGER, David; PUNDHIR, Sachin; EKSTRØM, Claus T et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 1, pp 17-24, issn 1367-4803, 8 p.Article

A probabilistic framework for aligning paired-end RNA-seq dataYIN HU; KAI WANG; XIAPING HE et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 16, pp 1950-1957, issn 1367-4803, 8 p.Article

DEGseq: an R package for identifying differentially expressed genes from RNA-seq dataLIKUN WANG; ZHIXING FENG; XI WANG et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 1, pp 136-138, issn 1367-4803, 3 p.Article

Supersplat-spliced RNA-seq alignmentBRYANT, Douglas W; SHEN, Rongkun; PRIEST, Henry D et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 12, pp 1500-1505, issn 1367-4803, 6 p.Article

Accurate and sensitive diagnosis of geminiviruses through enrichment, high-throughput sequencing and automated sequence identificationHAGEN, Charles; FRIZZI, Alessandra; GABRIELS, Suzan et al.Archives of virology. 2012, Vol 157, Num 5, pp 907-915, issn 0304-8608, 9 p.Article

FX: an RNA-Seq analysis tool on the cloudDONGWAN HONG; RHIE, Arang; CHONG, Hyonyong et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 5, pp 721-723, issn 1367-4803, 3 p.Article

High-throughput sequencing and clinical microbiology: progress, opportunities and challengesPALLEN, Mark J; LOMAN, Nicholas J; PENN, Charles W et al.Current opinion in microbiology. 2010, Vol 13, Num 5, pp 625-631, issn 1369-5274, 7 p.Article

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScriptBENELLI, Matteo; PESCUCCI, Chiara; MARSEGLIA, Giuseppina et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 24, pp 3232-3239, issn 1367-4803, 8 p.Article

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summariesHABEGGER, Lukas; SBONER, Andrea; GIANOULIS, Tara A et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 2, pp 281-283, issn 1367-4803, 3 p.Article

Fulcrum: condensing redundant reads from high-throughput sequencing studiesBURRIESCI, Matthew S; LEHNERT, Erik M; PRINGLE, John R et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 10, pp 1324-1327, issn 1367-4803, 4 p.Article

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)GRANT, Gregory R; FARKAS, Michael H; PIZARRO, Angel D et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 18, pp 2518-2528, issn 1367-4803, 11 p.Article

RNA-Seq analysis in MeVHOWE, Eleanor A; SINHA, Raktim; SCHLAUCH, Daniel et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 22, pp 3209-3210, issn 1367-4803, 2 p.Article

A new approach to bias correction in RNA-SeqJONES, Daniel C; RUZZO, Walter L; XINXIA PENG et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 7, pp 921-928, issn 1367-4803, 8 p.Article

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levelsSCHULZ, Marcel H; ZERBINO, Daniel R; VINGRON, Martin et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 8, pp 1086-1092, issn 1367-4803, 7 p.Article

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experimentsPICARDI, Ernesto; D'ANTONIO, Mattia; CARRABINO, Danilo et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 9, pp 1311-1312, issn 1367-4803, 2 p.Article

Identification of novel transcripts in annotated genomes using RNA-SeqROBERTS, Adam; PIMENTEL, Harold; TRAPNELL, Cole et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 17, pp 2325-2329, issn 1367-4803, 5 p.Article

Studying bacterial transcriptomes using RNA-seqCROUCHER, Nicholas J; THOMSON, Nicholas R.Current opinion in microbiology. 2010, Vol 13, Num 5, pp 619-624, issn 1369-5274, 6 p.Article

Novel Microbial Populations in Ambient and Mesophilic Biogas-Producing and Phenol-Degrading Consortia Unraveled by High-Throughput SequencingFENG JU; TONG ZHANG.Microbial ecology. 2014, Vol 68, Num 2, pp 235-246, issn 0095-3628, 12 p.Article

Identifying differentially expressed transcripts from RNA-seq data with biological variationGLAUS, Peter; HONKELA, Antti; RATTRAY, Magnus et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 13, pp 1721-1728, issn 1367-4803, 8 p.Article

easyRNASeq: a bioconductor package for processing RNA-Seq dataDELHOMME, Nicolas; PADIOLEAU, Ismaël; FURLONG, Eileen E et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 19, pp 2532-2533, issn 1367-4803, 2 p.Article

RNA-SeQC: RNA-seq metrics for quality control and process optimizationDELUCA, David S; LEVIN, Joshua Z; SIVACHENKO, Andrey et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 11, pp 1530-1532, issn 1367-4803, 3 p.Article

Tools for mapping high-throughput sequencing dataFONSECA, Nuno A; RUNG, Johan; BRAZMA, Alvis et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 24, pp 3169-3177, issn 1367-4803, 9 p.Article

A pipeline for RNA-seq data processing and quality assessmentGONCALVES, Angela; TIKHONOV, Andrew; BRAZMA, Alvis et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 6, pp 867-869, issn 1367-4803, 3 p.Article