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A bioimage informatics approach to automatically extract complex fungal networksOBARA, Boguslaw; GRAU, Vicente; FRICKER, Mark D et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 18, pp 2374-2381, issn 1367-4803, 8 p.Article

A de novo metagenomic assembly program for shotgun DNA readsBINBIN LAI; RUOGU DING; YANG LI et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 11, pp 1455-1462, issn 1367-4803, 8 p.Article

A novel and versatile computational tool to model translationCHU, Dominique; ZABET, Nicolae; VON DER HAAR, Tobias et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 2, pp 292-293, issn 1367-4803, 2 p.Article

A novel specific edge effect correction method for RNA interference screeningsCARRALOT, Jean-Philippe; OGIER, Arnaud; BOESE, Annette et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 2, pp 261-268, issn 1367-4803, 8 p.Article

A robust approach to extract biomedical events from literatureBUI, Quoc-Chinh; SLOOT, Peter M. A.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 20, pp 2654-2661, issn 1367-4803, 8 p.Article

AMPA: an automated web server for prediction of protein antimicrobial regionsTORRENT, Marc; DI TOMMASO, Paolo; PULIDO, David et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 1, pp 130-131, issn 1367-4803, 2 p.Article

ANGES: reconstructing ANcestral GEnomeS mapsJONES, Bradley R; RAJARAMAN, Ashok; TANNIER, Eric et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 18, pp 2388-2390, issn 1367-4803, 3 p.Article

ART: a next-generation sequencing read simulatorWEICHUN HUANG; LEPING LI; MYERS, Jason R et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 4, pp 593-594, issn 1367-4803, 2 p.Article

AURA: Atlas of UTR Regulatory ActivityDASSI, E; MALOSSINI, A; RE, A et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 1, pp 142-144, issn 1367-4803, 3 p.Article

Adjusting confounders in ranking biomarkers: a model-based ROC approachTAO YU; JIALIANG LI; SHUANGGE MA et al.Briefings in bioinformatics. 2012, Vol 13, Num 5, pp 513-523, issn 1467-5463, 11 p.Article

Affymetrix GeneChip microarray preprocessing for multivariate analysesMCCALL, Matthew N; ALMUDEVAR, Anthony.Briefings in bioinformatics. 2012, Vol 13, Num 5, pp 536-546, issn 1467-5463, 11 p.Article

An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detectionXINGBIN WANG; KANG, Dongwan D; KAMINSKI, Naftali et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 19, pp 2534-2536, issn 1367-4803, 3 p.Article

An infrastructure for ontology-based information systems in biomedicine: RICORDO case studyWIMALARATNE, Sarala M; GRENON, Pierre; HOEHNDORF, Robert et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 3, pp 448-450, issn 1367-4803, 3 p.Article

An integrated approach to reduce the impact of minor allele frequency and linkage disequilibrium on variable importance measures for genome-wide dataWALTERS, Raymond; LAURIN, Charles; LUBKE, Gitta H et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 20, pp 2615-2623, issn 1367-4803, 9 p.Article

An integrated open framework for thermodynamics of reactions that combines accuracy and coverageNOOR, Elad; BAR-EVEN, Arren; FLAMHOLZ, Avi et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 15, pp 2037-2044, issn 1367-4803, 8 p.Article

AnnTools: a comprehensive and versatile annotation toolkit for genomic variantsMAKAROV, Vladimir; O'GRADY, Tina; GUIQING CAI et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 5, pp 724-725, issn 1367-4803, 2 p.Article

Application and evaluation of automated methods to extract neuroanatomical connectivity statements from free textFRENCH, Leon; LANE, Suzanne; XU, Lydia et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 22, pp 2963-2970, issn 1367-4803, 8 p.Article

Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics dataTEKWE, Carmen D; CARROLL, Raymond J; DABNEY, Alan R et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 15, pp 1998-2003, issn 1367-4803, 6 p.Article

Approximate probabilistic analysis of biopathway dynamicsBING LIU; HAGIESCU, Andrei; PALANIAPPAN, Sucheendra K et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 11, pp 1508-1516, issn 1367-4803, 9 p.Article

BATMAN—an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian modelJIE HAO; ASTLE, William; DE LORIO, Maria et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 15, pp 2088-2090, issn 1367-4803, 3 p.Article

BRAT-BW: efficient and accurate mapping of bisulfite-treated readsHARRIS, Elena Y; PONTS, Nadia; LE ROCH, Karine G et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 13, pp 1795-1796, issn 1367-4803, 2 p.Article

BRCA1-mediated signaling pathways in ovarian carcinogenesisKARVE, Tejaswita M; XIN LI; SAHA, Tapas et al.Functional & integrative genomics (Print). 2012, Vol 12, Num 1, pp 63-79, issn 1438-793X, 17 p.Article

BadiRate: estimating family turnover rates by likelihood-based methodsLIBRADO, P; VIEIRA, F. G; ROZAS, J et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 2, pp 279-281, issn 1367-4803, 3 p.Article

Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion modelABATE, Francesco; ACQUAVIVA, Andrea; MACII, Enrico et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 16, pp 2114-2121, issn 1367-4803, 8 p.Article

Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needsDURRANT, Caroline; SWERTZ, Morris A; ALBERTS, Rudi et al.Briefings in bioinformatics. 2012, Vol 13, Num 2, pp 135-142, issn 1467-5463, 8 p.Article

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