Chemical substructures that enrich for biological activityKLEKOTA, Justin; ROTH, Frederick P.Bioinformatics (Oxford. Print). 2008, Vol 24, Num 21, pp 2518-2525, issn 1367-4803, 8 p.Article

The Synergizer service for translating gene, protein and other biological identifiersBERRIZ, Gabriel F; ROTH, Frederick P.Bioinformatics (Oxford. Print). 2008, Vol 24, Num 19, pp 2272-2273, issn 1367-4803, 2 p.Article

Query Chem : a Google-powered web search combining text and chemical structuresKLEKOTA, Justin; ROTH, Frederick P; SCHREIBER, Stuart L et al.Bioinformatics (Oxford. Print). 2006, Vol 22, Num 13, pp 1670-1673, issn 1367-4803, 4 p.Article

Discovering functional relationships : biochemistry versus geneticsWONG, Sharyl L; ZHANG, Lan V; ROTH, Frederick P et al.Trends in genetics (Regular ed.). 2005, Vol 21, Num 8, pp 424-427, issn 0168-9525, 4 p.Article

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteinsROZENBLATT-ROSEN, Orit; DEO, Rahul C; PEVZNER, Samuel J et al.Nature (London). 2012, Vol 487, Num 7408, pp 491-495, issn 0028-0836, 5 p.Article

Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variantsDERTI, Adnan; ROTH, Frederick P; CHURCH, George M et al.Nature genetics. 2006, Vol 38, Num 10, pp 1216-1220, issn 1061-4036, 5 p.Article

Numerous Conserved and Divergent MicroRNAs Expressed by Herpes Simplex Viruses 1 and 2JURAK, Igor; KRAMER, Martha F; MELLOR, Joseph C et al.Journal of virology. 2010, Vol 84, Num 9, pp 4659-4672, issn 0022-538X, 14 p.Article

High-Quality Binary Protein Interaction Map of the Yeast Interactome NetworkHAIYUAN YU; BRAUN, Pascal; TONG HAO et al.Science (Washington, D.C.). 2008, Vol 322, Num 5898, pp 104-110, issn 0036-8075, 7 p.Article

Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletionsST. ONGE, Robert P; MANI, Ramamurthy; OH, Julia et al.Nature genetics. 2007, Vol 39, Num 2, pp 199-206, issn 1061-4036, 8 p.Article

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System NetworkSHAHID MUKHTAR, M; CARVUNIS, Anne-Ruxandra; PEVZNER, Samuel J et al.Science (Washington, D.C.). 2011, Vol 333, Num 6042, pp 596-601, issn 0036-8075, 6 p.Article

FuncBase: a resource for quantitative gene function annotationBEAVER, John E; TASAN, Murat; GIBBONS, Francis D et al.Bioinformatics (Oxford. Print). 2010, Vol 26, Num 14, pp 1806-1807, issn 1367-4803, 2 p.Article

Intensity-based protein identification by machine learning from a library of tandem mass spectraELIAS, Joshua E; GIBBONS, Francis D; KING, Oliver D et al.Nature biotechnology. 2004, Vol 22, Num 2, pp 214-219, issn 1087-0156, 6 p.Article

SILVER helps assign peptides to tandem mass spectra using intensity-based scoringGIBBONS, Francis D; ELIAS, Joshua E; GYGI, Steven P et al.Journal of the American Society for Mass Spectrometry. 2004, Vol 15, Num 6, pp 910-912, issn 1044-0305, 3 p.Article

The Genetic Landscape of a CellCOSTANZO, Michael; BARYSHNIKOVA, Anastasia; PRINZ, Jeany et al.Science (Washington, D.C.). 2010, Vol 327, Num 5964, pp 425-431, issn 0036-8075, 7 p.Article

Challenges in translating plasma proteomics from bench to bedside : update from the NHLBI Clinical Proteomics ProgramsGERSZTEN, Robert E; ACCURSO, Frank; SRINIVAS, Pothur et al.American journal of physiology. Lung cellular and molecular physiology. 2008, Vol 39, Num 1, issn 1040-0605, L16-L22Article

Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesisGUNSALUS, Kristin C; HUI GE; NING LI et al.Nature (London). 2005, Vol 436, Num 7052, pp 861-865, issn 0028-0836, 5 p.Article

Evidence for dynamically organized modularity in the yeast protein-protein interaction networkHAN, Jing-Dong J; BERTIN, Nicolas; VIDAL, Marc et al.Nature (London). 2004, Vol 430, Num 6995, pp 88-93, issn 0028-0836, 6 p.Article

Global mapping of the yeast genetic interaction networkHIN YAN TONG, Amy; LESAGE, Guillaume; YIQUN CHEN et al.Science (Washington, D.C.). 2004, Vol 303, Num 5659, pp 808-813, issn 0036-8075, 6 p.Article

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscuraGRAD, Yonatan H; ROTH, Frederick P; HALFON, Marc S et al.Bioinformatics (Oxford. Print). 2004, Vol 20, Num 16, pp 2738-2750, issn 1367-4803, 13 p.Article

GoFish finds genes with combinations of Gene Ontology attributesBERRIZ, Gabriel F; WHITE, James V; KING, Oliver D et al.Bioinformatics (Oxford. Print). 2003, Vol 19, Num 6, pp 788-789, issn 1367-4803, 2 p.Article

Next generation software for functional trend analysisBERRIZ, Gabriel F; BEAVER, John E; CENIK, Can et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 22, pp 3043-3044, issn 1367-4803, 2 p.Article

Metabolomic identification of novel biomarkers of myocardial ischemiaSABATINE, Marc S; LIU, Emerson; MORROW, David A et al.Circulation (New York, N.Y.). 2005, Vol 112, Num 25, pp 3868-3875, issn 0009-7322, 8 p.Article

Towards a proteome-scale map of the human protein-protein interaction networkRUAL, Jean-Francois; VENKATESAN, Kavitha; KLITGORD, Niels et al.Nature (London). 2005, Vol 437, Num 7062, pp 1173-1178, issn 0028-0836, 6 p.Article

A map of the Interactome network of the metazoan C. elegansSIMING LI; ARMSTRONG, Christopher M; GOLDBERG, Debra S et al.Science (Washington, D.C.). 2004, Vol 303, Num 5657, pp 540-543, issn 0036-8075, 4 p.Article

Characterizing gene sets with FuncAssociateBERRIZ, Gabriel F; KING, Oliver D; BRYANT, Barbara et al.Bioinformatics (Oxford. Print). 2003, Vol 19, Num 18, pp 2502-2504, issn 1367-4803, 3 p.Article